!version: $Revision: 1.1.1.1 $!date: $Date: 03/27/2012 09:50:00 $!Title:PO_DBxref.txt!Plant Ontology Consortium!www.plantontology.org!created by: Pankaj Jaiswal!modified by: Ramona Walls!Note that url's are not necessarily stable entities and that some databases may have many other access routes or mirror sites.!Syntax for database cross-references either within nodes in an ontology or within other PO documents, e.g. PO.defs, will be standardized and, as far as possible, we use the abbreviations used by the NCBI. See: http://www.ncbi.nlm.nih.gov/collab/db_xref.html. The syntax would then be: Database_Abbreviation:identifier (as adopted by GO). !This file has been updated to reflect the perl file that includes the current abbreviations being used on AmiGO by the Plant Ontology. Stanzas for abbreviations that are no longer in use are still included, but are followed by a comment to that effect.!unknown fields have been left blankabbreviation: POdatabase:Plant Ontology Consortium AmiGO browserobject: Plant Ontology termexample_id: PO:0025034generic_url:http://www.plantontology.orgurl_syntax:url_example:abbreviation: AgBasedatabase: AgBaseobject: Anything with a Uniprot Gene Name or GenBank ID or GO IDexample_id: AgBase:Q8VWP8generic_url: http://agbase.msstate.edu/index.htmlurl_syntax: http://www.agbase.msstate.edu/cgi-bin/getEntry.pl?db_pick=all&database=UniProtKB/TrEMBL&gb_acc=$acc_nourl_example: http://www.agbase.msstate.edu/cgi-bin/getEntry.pl?db_pick=all&database=UniProtKB/TrEMBL&uid=Q8VWP8_GOSHI&gb_acc=Q8VWP8 !not in useabbreviation: AGI_LocusCodedatabase: Arabidopsis Genome Initiative (TAIR, TIGR, MIPS)object: Locus identifierexample: AGI_LocusCode:At2g17950generic_url: http://www.arabidopsis.orgurl_syntax: http://mips.gsf.de/cgi-bin/proj/thal/search_gene?code=url_syntax: http://www.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=ath1&orf=url_syntax: http://arabidopsis.org/servlets/TairObject?type=locus&name=example_url: http://mips.gsf.de/cgi-bin/proj/thal/search_gene?code=At2g17950example_url: http://www.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=ath1&orf=At2g17950example_url: http://arabidopsis.org/servlets/TairObject?type=locus&name=At2g17950!not in useabbreviation: APdatabase: Angiosperm Phylogeny Websiteobject: definitions for anatomy termsexample_id: APweb:Glossarygeneric_url: http://www.mobot.org/mobot/research/apweb/url_syntax: http://www.mobot.org/mobot/research/apweb/top/glossarya_h.htmlurl_example: http://www.mobot.org/mobot/research/apweb/top/glossarya_h.html!not in useabbreviation: bibdatabase: AGRICOLAobject: call numberexample: MARC TAG 016 or bib=0000-05160generic_url: http://www.nal.usda.gov/ag98/!not in useabbreviation: CDGdatabase: Candida Genomome Databaseobject: example_id: generic_url: http://www.candidagenome.orgurl_syntax: http://www.candidagenome.org/cgi-bin/locus.pl?locus=$acc_nourl_example: abbreviation: cosmoss_PpV1.2database: plantco.de|cosmoss.orgobject: Anything with a Cosmoss accession numberexample_id: cosmoss_PpV1.2:Pp1s47_77V2.1generic_url: https://www.cosmoss.org/annotation/genonauturl_syntax: https://www.cosmoss.org/annotation/genonaut?accession=ACCESSION&version=V1.2url_example: https://www.cosmoss.org/annotation/genonaut?accession=Pp1s53_22V2.1&version=V1.2 abbreviation: DDBdatabase: Dictybaseobject: example_id: generic_url: http://dictybase.orgurl_syntax: http://dictybase.org/db/cgi-bin/dictyBase/reference/reference.pl?refNo=$acc_nourl_syntax: http://dictybase.org/db/cgi-bin/gene_page.pl?dictybaseid=$acc_nourl_example: abbreviation: dros_cdnadatabase: object: example_id: generic_url: http://weasel.lbl.govurl_syntax: http://weasel.lbl.gov/cgi-bin/EST/community_query/ctgReport.pl?db=estlabtrack&id_type=0&id_value=$acc_nourl_example: !generic link not workingabbreviation: ECdatabase: The Enzyme Commission.example: EC:1.1.1.1generic_url: http://ca.expasy.org/url_syntax: http://ca.expasy.org/cgi-bin/nicezyme.pl?$acc_nourl_example: abbreviation: EMBLdatabase: EMBL-EBI International Nucleotide Sequence Data Library/DDBJ/GenBank.object: Sequence accession numbersynonym: GBsynonym: DDBJexample: EMBL:AA816246generic_url: http://www.ebi.ac.uk/embl/url_syntax: http://www.ebi.ac.uk/cgi-bin/emblfetch?style=html&Submit=Go&id=$acc_nourl_example: http://www.ebi.ac.uk/cgi-bin/emblfetch?style=html&Submit=Go&id=AA816246abbreviation: ENSEMBLdatabase: Ensembl genome databaseobject: example_id: generic_url: http://www.ensembl.orgurl_syntax: http://www.ensembl.org/perl/protview?peptide=$acc_nourl_example: abbreviation: ENZYMEdatabase: The Swiss Institute of Bioinformatics database of Enzymes.object: Identifier.example: ENZYME:EC 1.1.1.1generic_url: http://www.expasy.ch/url_syntax: http://www.expasy.ch/cgi-bin/nicezyme.pl?url_example: http://www.expasy.ch/cgi-bin/nicezyme.pl?1.1.1.1!not in useabbreviation: FBdatabase: Flybaseobject: example_id: generic_url: http://flybase.bio.indiana.eduurl_syntax: http://flybase.bio.indiana.edu/reports/$acc_no.htmlurl_example: abbreviation: genedb_lmajordatabase: Gene DB, Leishmaniaobject: example_id: generic_url: http://www.genedb.orgurl_syntax: http://www.genedb.org/genedb/Search?organism=leish&name=$acc_nourl_example: abbreviation: genedb_pfalciparumdatabase: Gene DB, Plasmodiumobject: example_id: generic_url: http://www.genedb.orgurl_syntax: http://www.genedb.org/genedb/Search?organism=malaria&name=$acc_nourl_example: abbreviation: genedb_spombedatabase: Gene DBobject: example_id: generic_url: http://www.genedb.orgurl_syntax: http://www.genedb.org/genedb/Search?organism=pombe&name=$acc_nourl_example: abbreviation: genedb_tbruceidatabase: Gene DB, Trypaonsomaobject: example_id: generic_url: http://www.genedb.orgurl_syntax: http://www.genedb.org/genedb/Search?organism=tryp&name=$acc_nourl_example: abbreviation: GOdatabase: Gene Ontology Databaseobject: Gene Ontology term identifierexample: GO:0097218generic_url: http://www.geneontology.org/url_syntax: http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?action=query&view=query&search_constraint=terms&query=$acc_nourl_syntax: http://amigo.geneontology.org/cgi-bin/amigo/gp-details.cgi?gp=$acc_nourl_example: http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?action=query&view=query&search_constraint=terms&query=0097218abbreviation: GO_REFdatabase: Gene Ontology Database references.object: Reference (points to web page).example: GO_REF:ndgeneric_url: http://www.geneontology.org/#refurl_example: http://www.geneontology.org/doc/GO.ndref.html!not in use! note: the following three entries, GOA:interpro, GOA:spec, and! GOA:spkw, will be moved to the GO_REF dataset at some point; in the! meantime, they are here so they'll be documented somewhereabbreviation: GOA:interprodatabase: Gene Ontology Annotation at EBI annotations from InterPro to GO mapping.object: Reference (points to web page).url_example: http://www.geneontology.org/goa.interpro.html!not in useabbreviation: GOA:specdatabase: Gene Ontology Annotation at EBI annotations from EC mapping.object: Reference (points to web page).url_example: http://www.geneontology.org/goa.spec.html!not in useabbreviation: GOA:spkwdatabase: Gene Ontology Annotation at EBI annotations from keyword mapping.object: Reference (points to web page).url_example: http://www.geneontology.org/goa.spkw.html!not in useabbreviation: GOC:unpublisheddatabase: Temporary reference for unpublished papers.object: Doesn't link anywhere yet.!not in useabbreviation: GRdatabase: Gramene: A Comparative Mapping Resource for Grainsobject: Proteinexample_id: GR:P93436generic_url: http://www.gramene.org/url_syntax: http://www.gramene.org/db/protein_search?acc=$acc_nourl_syntax: http://www.gramene.org/db/pub_search?ref_id=$acc_nourl_syntax: http://www.gramene.org/perl/protein_search?acc=$acc_nourl_example: http://www.gramene.org/db/protein/protein_search?acc=P93436abbreviation: GR_MUTdatabase: Gramene: A Comparative Mapping Resource for Grainsobject: Mutantsexample_id: GR_MUT:GR:0060198generic_url: http://www.gramene.org/url_syntax: http://www.gramene.org/db/genes/search_gene?acc=$acc_nourl_example: http://www.gramene.org/db/genes/search_gene?acc=GR:0060198abbreviation: GROdatabase: Gramene: A Comparative Mapping Resource for Grainsobject: growth stageexample: generic_url: url_syntax: http://www.gramene.org/db/ontology/search_term?id=GRO:$acc_nourl_example: !has been replaced by the POabbreviation: GR_PROTEINdatabase: Gramene: A Comparative Mapping Resource for Grainsobject: Proteinsexample:generic_url: http://www.gramene.org/url_syntax: http://www.gramene.org/db/protein/protein_search?acc=$acc_nourl_example:abbreviation: GR_QTLdatabase: Gramene: A Comparative Mapping Resource for Grainsobject: Mutantsexample: GR_QTL:CQA11generic_url: http://www.gramene.org/url_syntax: http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$acc_nourl_example: http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=CQA11abbreviation: GR_REFdatabase: Gramene: A Comparative Mapping Resource for Grainsobject: Referenceexample: GR_REF:659generic_url: http://www.gramene.org/url_syntax: http://www.gramene.org/db/literature/pub_search?ref_id=$acc_nourl_example: http://www.gramene.org/perl/pub_search?ref_id=659abbreviation: PlantSystematics_image_archivedatabase: PlantSystematics.orgobject: image idexample: PlantSystematics_image_archivee:37658generic_url: http://plantsystematics.orgurl_syntax: http://www.plantsystematics.org/imagebyid_$acc_no.htmlurl_example: http://www.plantsystematics.org/imagebyid_37658.htmlabbreviation: INDdatabase: AGRICOLAobject: call numberexample: IND84014403generic_url: http://agricola.cos.com/!not in useabbreviation: InterProdatabase: The InterPro database of protein domains and motifs.object: synonym: INTERPROexample: generic_url: http://www.ebi.ac.uk/interpro/url_syntax:!not in useabbreviation: IPIdatabase: International Protein Index.object: Identifier.Versionexample: IPI:IPI00000005.1generic_url: http://www.ebi.ac.uk/IPI/IPIhelp.html!not in useabbreviation: ISBNdatabase: International Standard Book Numberobject: book identifierexample: ISBN:0471738433http://openisbn.com/search.php?q=0471738433&isbn=1/generic_url: http://openisbn.comurl_syntax: http://openisbn.com/search.php?q=$acc_no&isbn=1/url_example: http://openisbn.com/search.php?q=0471738433&isbn=1/abbreviation: Jaiswal_Labdatabase: Jaiswal_Labobject: mRNAexample_id: Jaiswal_Lab:gene00002generic_url: http://wiki.plantontology.org/index.php/PO_REF:00008url_syntax: http://wiki.plantontology.org/index.php/PO_REF:00008url_example: http://wiki.plantontology.org/index.php/PO_REF:00008abbreviation: JSTORdatabase: Digital archive of scholarly articlesobject: journal articleexample_id: JSTOR:3093870generic_url: http://www.jstor.org/url_syntax: http://www.jstor.org/stable/$acc_nourl_example: http://www.jstor.org/stable/3093870 abbreviation: KEGGdatabase: Kyoto Encyclopedia of Genes and Genomes.generic_url: http://www.genome.ad.jp/kegg/!not in useabbreviation: KEGG_PATHWAYdatabase: KEGG Pathways Database.object: Pathway.example: KEGG_PATHWAY:ot00020generic_url: http://www.genome.ad.jp/kegg/docs/upd_pathway.htmlurl_syntax: http://www.genome.ad.jp/dbget-bin/www_bget?path:url_example: http://www.genome.ad.jp/dbget-bin/www_bget?path:ot00020!not in useabbreviation: LIGANDdatabase: KEGG LIGAND Database.object: Enzyme or Compound.example: LIGAND:C00577example: LIGAND:EC 1.1.1.1url_syntax: http://www.genome.ad.jp/dbget-bin/www_bget?ec:url_syntax: http://www.genome.ad.jp/dbget-bin/www_bget?cpd:generic_url: http://www.genome.ad.jp/kegg/docs/upd_ligand.html#ENZYMEgeneric_url: http://www.genome.ad.jp/kegg/docs/upd_ligand.html#COMPOUNDurl_example: http://www.genome.ad.jp/dbget-bin/www_bget?ligand+1.1.1.1url_example: http://www.genome.ad.jp/dbget-bin/www_bget?cpd:C00577!not in useabbreviation: LocusIDdatabase: NCBI LocusLink ID.object: Identifier.example: LocusID:3195generic_url: http://www.ncbi.nlm.nih.gov/url_syntax:url_example: http://www.ncbi.nlm.nih.gov:80/LocusLink/LocRpt.cgi?l=3195!not in useabbreviation: MaizeGDBdatabase: Maize Genetics and Genomics Databaseobject: Anything with a MaizeGDB Object ID Number or Gene Model Nameexample_id: MaizeGDB:881225generic_url: http://www.maizegdb.org/url_syntax: http://www.maizegdb.org/cgi-bin/id_search.cgi?id=$acc_nourl_example: http://www.maizegdb.org/cgi-bin/id_search.cgi?id=881225 abbreviation: MaizeGDB_REFdatabase: Maize Genetics and Genomics Databaseobject: MaizeGDB referencesexample_id:generic_url: http://www.maizegdb.org/url_syntax: http://www.maizegdb.org/cgi-bin/id_search.cgi?id=$acc_nourl_example:!has been replaced by universal MaizeGDBabbreviation: MEDLINEdatabase: The Medline literature database.object: Identifier.example: MEDLINE:20572430generic_url:url_syntax:!not in useabbreviation: METACYCdatabase: Metacyc Encyclopedia of Metabolic Pathwaysobject: example:generic_url: http://metacyc.orgurl_syntax:http://biocyc.org/META/substring-search?type=NIL&object=$acc_noabbreviation: MACSC_GENETIC_STOCKSdatabase: Maize Genetics and Genomics Databaseobject: example:generic_url: http://www.maizegdb.org/cgi-bin/displaystockrecord.cgi?id=$acc_nourl_syntax:http:abbreviation: MACSC_REFdatabase: Maize Genetics and Genomics Databaseobject: example:generic_url: http://www.maizegdb.org/cgi-bin/id_search.cgi?id=$acc_nourl_syntax:http: "mgi"=>"http://www.informatics.jax.org/searches/accession_report.cgi?id=$acc_no",abbreviation: NALdatabase: AGRICOLAobject: call numberexample: NAL:TP248.2 P76 v.14generic_url: http://www.nal.usda.gov/ag98/ag98.html!not in useabbreviation: NASCdatabase: Nottingham Arabidopsis Stock Centre Seeds Databaseobject: example:generic_url: http://arabidopsis.infourl_syntax: http://arabidopsis.info/StockInfo?NASC_id=$acc_noexample_url:abbreviation: NASC_codedatabase: Nottingham Arabidopsis Stock Centre Seeds Databaseobject: NASC code Identifierexample: NASC_code:N3371generic_url: http://arabidopsis.infourl_syntax: http://seeds.nottingham.ac.uk/NASC/stockatidb.lasso?code=example_url: http://seeds.nottingham.ac.uk/NASC/stockatidb.lasso?code=N3371!not in useabbreviation: NCBIdatabase: National Center for Biotechnology Information, Bethesda.object: Prefix.example: NCBI_gigeneric_url: http://www.ncbi.nlm.nih.gov/!not in useabbreviation: NCBI_gidatabase: NCBI databases.object: Identifier.example: NCBI_gi:10727410generic_url: http://www.ncbi.nlm.nih.gov/url_syntax:url_example: http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=nucleotide&list_uids=10727410&dopt=GenBank!not in useabbreviation: NCBI_NMdatabase: NCBI RefSeq.object: mRNA identifier.example: NCBI_NM:123456generic_url: http://www.ncbi.nlm.nih.gov/url_syntax:!not in useabbreviation: NCBI_NPdatabase: NCBI RefSeq.object: Protein identifier.example: NCBI_NP:123456generic_url: http://www.ncbi.nlm.nih.gov/url_syntax:!not in useabbreviation: OBO_SF_POdatabase: Source Forge OBO Plant Ontology (PO) term request trackerobject: Plant Ontology term requestexample_id: OBO_SF_PO:3184921generic_url: http://sourceforge.net/tracker/?func=browse&group_id=76834&atid=835555url_syntax: https://sourceforge.net/tracker/index.php?func=detail&aid=$acc_no&group_id=76834&atid=835555url_example: https://sourceforge.net/tracker/index.php?func=detail&aid=3184921&group_id=76834&atid=835555abbreviation: PDBdatabase: Protein Data Bank.object: Identifier.example: PDB:1A4Ugeneric_url: http://msd.ebi.ac.uk/generic_url: http://www.rcsb.org/pdb/url_syntax:url_example: http://www.rcsb.org/pdb/cgi/explore.cgi?pid=223051005992697&pdbId=1A4U!not in useabbreviation: Pfamdatabase: Pfam: Protein families database of alignments and HMMs.object: Accession number.example: Pfam:PF00046generic_url: http://www.sanger.ac.uk/Software/Pfam/url_syntax: http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?url_example: http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00046!not in useabbreviation: PIRdatabase: Protein Information Resource.object: Accession number.example: PIR:I49499generic_url: http://www-nbrf.georgetown.edu/pir/url_syntax: http://pir.georgetown.edu/cgi-bin/pirwww/nbrfget?uid=url_example: http://pir.georgetown.edu/cgi-bin/pirwww/nbrfget?uid=I49499!not in useabbreviation: PMIDdatabase: PubMedobject: Identifiersynonym: PUBMEDexample: PMID:4208797generic_url: http://www.ncbi.nlm.nih.gov/PubMed/url_syntax:url_example: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=$acc_noabbreviation: POCdatabase: Plant Ontology Consortiumobject: curatorexample_id: POC:curatorsgeneric url: http://wiki.plantontology.org/index.php/Main_Pageurl_syntax: http://wiki.plantontology.org/index.php/Plant_Ontology_curatorsurl_example: http://wiki.plantontology.org/index.php/Plant_Ontology_curatorsabbreviation: PO_REFdatabase: Plant Ontology custom referencesobject: Reference identifierexample_id: PO_REF:00001generic url: http://wiki.plantontology.org/index.php/PO_referencesurl_syntax: http://wiki.plantontology.org/index.php/PO_REF:$acc_nourl_example: http://wiki.plantontology.org/index.php/PO_REF:00001abbreviation: Prositedatabase: Prosite. Database of protein families and domains.object: Accession number.example: Prosite:PS00365generic_url: http://www.expasy.ch/prosite/url_syntax: http://www.expasy.ch/cgi-bin/prosite-search-ac?url_example: http://www.expasy.ch/cgi-bin/prosite-search-ac?PS00365!not in useabbreviation: protein_iddatabase: The protein identifier shared by DDBJ/EMBL-bank/GenBank nucleotidesequence databases.object: Identifier.example: protein_id:CAA71991generic_url:url_syntax:!not in useabbreviation: PROWdatabase: Protein Reviews on the Web.generic_url: http://www.ncbi.nlm.nih.gov/prow/!not in useabbreviation: PUBMEDdatabase: PubMedobject: Identifiersynonym: PMIDexample: PUBMED:4208797generic_url: http://www.ncbi.nlm.nih.gov/PubMed/url_syntax:url_example: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=$acc_noabbreviation: REACTOMEdatabase: Reactome pathway databaseobject: example: generic_url: http://www.reactome.orgurl_syntax: http://www.reactome.org/cgi-bin/eventbrowser?DB=gk_current&ID=$acc_noabbreviation: RESIDdatabase: RESID Database of Protein Modifications.object: Identifier.example: RESID:AA0062generic_url: ftp://ftp.ncifcrf.gov/pub/users/residues/url_syntax:!not in useabbreviation: RADdatabase: RGD databaseobject: example: generic_url: http://rgd.mcw.eduurl_syntax: http://rgd.mcw.edu/tools/references/references_view.cgi?id=$acc_noabbreviation: SGDdatabase: Saccharomyces Genome Databaseobject: example: generic_url: http://db.yeastgenome.orgurl_syntax: http://db.yeastgenome.org/cgi-bin/locus.pl?sgdid=$acc_nourl_syntax: http://db.yeastgenome.org/cgi-bin/SGD/reference/reference.pl?refNo=$acc_noabbreviation: SGD_REFdatabase: Saccharomyces Genome Databaseobject: referenceexample: generic_url: http://db.yeastgenome.orgurl_syntax: http://db.yeastgenome.org/cgi-bin/reference/reference.pl?dbid=$acc_noabbreviation: SGN_genedatabase: Sol Genomics Networkobject: locus identifierexample_id: SGN_gene:7740generic url: http://solgenomics.net/url_syntax: http://solgenomics.net/phenome/locus_display.pl?locus_id=$acc_nourl_syntax: http://www.sgn.cornell.edu/phenome/locus_display.pl?locus_id=$acc_nourl_example: http://solgenomics.net/phenome/locus_display.pl?locus_id=7740abbreviation: SGN_germplasmdatabase: Sol Genomics Networkobject: stock/accession/germplasm identifierexample_id: SGN_germplasm:6583generic url: http://solgenomics.net/url_syntax: http://solgenomics.net/stock/$acc_no/view/url_example: http://solgenomics.net/stock/6583/view/abbreviation: SGN_refdatabase: Sol Genomics Networkobject: reference identifierexample_id: SGN_ref:800generic url: http://solgenomics.net/url_syntax: http://www.sgn.cornell.edu/chado/publication.pl?pub_id=$acc_nourl_example: http://www.sgn.cornell.edu/chado/publication.pl?pub_id=800abbreviation: SMDdatabase: Stanford Microarray Databaseobject:example:generic_url: http://genome-www.stanford.edu/microarrayurl_syntax:!not in useabbreviation: SPdatabase: SRS database at EBIobject: example: generic_url: url_syntax: http://srs.ebi.ac.uk/srs6bin/cgi-bin/wgetz?-e+[SWALL-acc:$acc_no]abbreviation: SPTRdatabase: SRS database at EBIobject: example: generic_url: http://srs.ebi.ac.ukurl_syntax: http://srs.ebi.ac.uk/srs6bin/cgi-bin/wgetz?-e+[SWALL-acc:$acc_no]abbreviation: SWALLdatabase: ExPASY Bioinformatics Resource Portalobject: example: generic_url: http://ca.expasy.orgurl_syntax: http://ca.expasy.org/cgi-bin/sprot-search-de?S=1&T=1&SEARCH=$acc_noabbreviation: Swiss-Protdatabase: Swiss-Prot protein database.object: Accession number.synonym: SPsynonym: SWPsynonym: SWISS-PROTexample: Swiss-Prot:P45867generic_url: http://www.ebi.ac.uk/swissprot/generic_url: http://ca.expasy.org/sprot/url_syntax: http://www.ebi.uniprot.org/uniprot-srv/uniProtView.do?proteinac=$acc_nourl_example: http://www.expasy.ch/cgi-bin/sprot-search-ac?P45867abbreviation: SPTRdatabase: The combination of SWISS-PROT and TrEMBL; includes TrEMBLnew.object: Accession number.synonym: SWALLexample: SPTR:P45867generic_url: http://www.ebi.ac.uk/swissprot/generic_url: http://ca.expasy.org/sprot/url_syntax: http://www.expasy.ch/cgi-bin/sprot-search-ac?url_example: http://www.expasy.ch/cgi-bin/sprot-search-ac?P45867!not in useabbreviation: TAIRdatabase: The Arabidopsis Information Resource.object: Accession number.example: TAIR:gene:2062713generic_url: http://www.arabidopsis.org/url_syntax: http://arabidopsis.org/servlets/TairObject?accession=$acc_nourl_example: http://www.arabidopsis.org/servlets/TairObject?accession=gene:2062713abbreviation: taxondatabase: NCBI Taxman.object: Identifier.example: taxon:7227generic_url: http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/url_syntax:!not in useabbreviation: TCdatabase: The Transport Protein Database.object: Identifier.example: TC:9.A.4.1.1generic_url: http://tcdb.ucsd.edu/tcdb/url_syntax: http://www.tcdb.org/tcdb/index.php?tc=$acc_nourl_example: http://tcdb.ucsd.edu/tcdb/tcprotein.php?substrate=9.A.4.1.1abbreviation: TIGRdatabase: The Institute for Genomic Research.object: example: generic_url: http://www.tigr.org/url_syntax:abbreviation: TIGR_Ath1database: The Institute for Genomic Research, Arabidopsis thaliana database.object: Accession.example: TIGR_Ath1:At3g01440generic_url: http://www.tigr.org/tdb/e2k1/ath1/ath1.shtmlurl_syntax: http://www.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=ath1&orf=$acc_nourl_example: http://www.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=ath1&orf=At3g01440abbreviation: TIGRdatabase: The Institute for Genomic Research.object: example: generic_url: http://www.tigr.org/url_syntax:"tigr_cmr"=>"http://cmr.tigr.org/tigr-scripts/CMR/shared/GenePage.cgi?locus=$acc_no",abbreviation: TIGRdatabase: The Institute for Genomic Research.object: example: generic_url: http://www.tigr.org/url_syntax: "tigr_egad"=>"http://www.tigr.org/tigr-scripts/CMR2/ht_report.spl?prot_id=$acc_no", abbreviation: TIGRFAMSdatabase: The Institute for Genomic Research.object: example: generic_url: http://www.tigr.org/url_syntax: http://cmr.tigr.org/tigr-scripts/CMR/HmmReport.cgi?hmm_acc=$acc_noabbreviation: TIGR_PFG1database: The Institute for Genomic Research.object: example: generic_url: http://www.tigr.org/url_syntax: http://www.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=pfa1&orf=$acc_noabbreviation: TIGR_REFdatabase: The Institute for Genomic Research.object: example: generic_url: http://www.tigr.org/url_syntax: http://www.tigr.org/tdb/GO_REF/GO_REF.shtmlabbreviation: TIGR_TBA1database: The Institute for Genomic Research.object: example: generic_url: http://www.tigr.org/url_syntax: http://www.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=tba1&orf=$acc_no abbreviation: TIGR_TGIdatabase: The Institute for Genomic Research, TIGR Gene Index.object: TC accession.example: TIGR_TGI:Cattle_TC123931generic_url: http://www.tigr.org/url_syntax: http://www.tigr.org/tigr-scripts/nhgi_scripts/tc_report.pl?tc=?url_example:http://www.tigr.org/tigr-scripts/nhgi_scripts/tc_report.pl?tc=Cattle_TC123931!not in useabbreviation: TIGR_TIGRFAMSdatabase: The Institute for Genomic Research, TIGRFAMs HMM collection.object: Accession.example: TIGR_TIGRFAMS:TIGR00254generic_url: http://www.tigr.org/url_syntax: http://cmr.tigr.org/tigr-scripts/CMR/HmmReport.cgi?hmm_acc=$acc_nourl_example:http://www.tigr.org/tigr-scripts/CMR2/hmm_report.spl?acc=TIGR00254abbreviation: TRdatabase: Computer-annotated protein sequence database supplementingSWISS-PROT and containing the translations of all coding sequences(CDS) present in the EMBL Nucleotide Sequence Database but not yetintegrated in SWISS-PROT. Does not include TrEMBLnew.object: Accession number.example: TrEMBL:Q00177synonym: SPTREMBLsynonym: TREMBLsynonym: TrEMBLgeneric_url: http://www.ebi.ac.uk/swissprot/generic_url: http://ca.expasy.org/sprot/url_syntax: http://srs.ebi.ac.uk/srs6bin/cgi-bin/wgetz?-e+[SWALL-acc:$acc_no]url_example: http://srs.ebi.ac.uk/srs6bin/cgi-bin/wgetz?-e+[SWALL-acc:Q00177]abbreviation: TreeGenesdatabase: Forest Tree Genome Databaseobject: Anything with a TreeGenes ID Numberexample_id: TreeGenes:254generic_url: http://dendrome.ucdavis.edu/treegenes/url_syntax:http://dendrome.ucdavis.edu/treegenes/protein/view_protein.php?id=$acc_nourl_example:http://dendrome.ucdavis.edu/treegenes/protein/view_protein.php?id=254abbreviation: UM-BBDdatabase: The University of Minnesota Biocatalysis/Biodegradation Database.object: Prefix.example:generic_url: http://umbbd.ahc.umn.edu/index.htmlurl_syntax:!not in useabbreviation: UM-BBD_enzymeIDdatabase: The University of Minnesota Biocatalysis/Biodegradation Database.object: Enzyme identifier.example: UM-BBD_enzymeID:e0413generic_url: http://umbbd.ahc.umn.edu/index.htmlurl_syntax: http://umbbd.ahc.umn.edu:8007/umbbd/servlet/pageservlet?ptype=ep&enzymeID=url_example: http://umbbd.ahc.umn.edu:8007/umbbd/servlet/pageservlet?ptype=ep&enzymeID=e0413!not in useabbreviation: UM-BBD_pathwayIDdatabase: The University of Minnesota Biocatalysis/Biodegradation Database.object: Pathway identifier.example: UM-BBD_pathwayID:acrgeneric_url: http://umbbd.ahc.umn.edu/index.htmlurl_syntax:url_example: http://umbbd.ahc.umn.edu/acr/acr_map.html!not in useabbreviation: UNIPROTdatabase: Uniprot protein sequence databaseobject: example: generic_url: http://www.ebi.uniprot.orgurl_syntax: http://www.ebi.uniprot.org/uniprot-srv/uniProtView.do?proteinac=$acc_nourl_example:abbreviation: VIDAdatabase: Virus Database at University College Londonobject: example: generic_url: http://www.biochem.ucl.ac.uk/bsm/virus_database/VIDA.htmlurl_syntax: url_example:!not in useabbreviation: WBdatabase: WormBaseobject: example: generic_url: http://www.wormbase.orgurl_syntax: http://www.wormbase.org/db/searches/basic?class=Any&query=$acc_nourl_example:abbreviation: ZFINdatabase: The Zebrafish Model Organism Databaseobject: example: generic_url: http://zfin.orgurl_syntax: url_example: http://zfin.org/cgi-bin/ZFIN_jump?record=$acc_no
Last modified: Thu Apr 5 10:24:37 2012
